Tutorials

Each tutorial runs on a laptop CPU in a few minutes. Set JAX_PLATFORMS=cpu if you have no GPU.

#	Tutorial	You will learn
1	Tutorial 1 — The command line	every command of python -m neurogenesis and of the bridge
2	Tutorial 2 — Grow your first network	body plans, genomes, grow, stimulation and readout
3	Tutorial 3 — Neuron models and cost	switching neuron models, f–I curves, cost estimates
4	Tutorial 4 — Genes and evolution	genes, [0, 1] coding, island evolution, audits
5	Tutorial 5 — Projects, schedules and stages (experimental)	Projects, stages, Params, checkpoints (experimental)
6	Tutorial 6 — Geometry and fields (experimental)	geometries and fields (experimental)
7	Tutorial 7 — Your own rules, stages and models	writing your own developmental rule and stage
8	Tutorial 8 — Modules: share and compose circuits	saving, loading and composing modules
9	Tutorial 9 — Synaptic plasticity	STDP, Hebbian and three-factor rules
10	Tutorial 10 — The browser viewer	the browser viewer
11	Tutorial 11 — Desktop apps	the macOS, Windows and Linux apps
12	Tutorial 12 — Fit to data, validate, share	fitting Fit params to data, semi-supervised and Pareto evolution, validation assays, the module registry
13	Tutorial 13 — Import a connectome	connectome manifests, downloads and streaming import

PLACEHOLDER

Jupyter notebook versions of every tutorial (rendered with myst-nb, runnable on Binder / Colab), and a video walkthrough of tutorials 1–4.